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this has happened to a couple customers of ours.
the first issue was that the customer had WordPress installed and was using some 3rd party template or counter which was inserting a javascript trojan downloader in to the page on the fly. once the customer removed the template/counter, the issue went away.
the second issue was permissions. the customer had some script running with a file owned by apache.apache and 777. once we changed the permissions the javascript trojan went away, and the iframe insertion to uniqcontent went away as well.
contact me if you have any other questions.
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