I found an awesome program that does the job. EditPlus. 30 free trial...
You can do a "remote open" right off your server, and timeouts aren't a problem -- you just hit "control-s" (or file/save/blah) and EditPlus will connect to FTP and save to the correct directory, etc... It's an editor for programmers so all the codes are color coded and it has some macro recording functions... I highly recommend it so far if you like to code shit by hand. After 30 days I think it's $30.
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