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Google analytics will give you a third opinion of what your stats are ie who is right alexa or your server stats.
If everybody comes in the main door then that page is all you really need although you may be interested where else they go after etc.
If it's possible to bookmark a page inside and bypass your main page then you should include that (those) pages also if you want accurate figures. (this may also be why alexa is so different from your server stats)
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