Not sure if thats possible with FlashFXP
What maybe is easier is to just download them, keep the folder structure, and then go to c:\whatever\flvfiles and do a windows search for *.flv in that window. They will all show up, select all and copy and paste into another dir. Windows will then ask to overwrite, or gives you the option to save as trailer[1].flv, trailer[2].flv, etc.
Not sure if you can press Apply To All on that tho.
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