use mod_auth_mysql and get rid of the .htaccess files.
Pros:
1) easy to manage
2) automation ins easy
3) easy to cluster
4) flexibility
Cons:
1) uses mysql instead of files (if you can considerate this as a con. In my opnion it's a pro because the database could be located on another box, could be clustered and could have different security policy than the web server)
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