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Also see if you have iostat installed.
Do a iostat -x 5 and watch the read times and try to see if a particular partition is hitting high numbers.
If you don't have it installed it comes with the sysstat rpm. Would need more specifics like OS type, etc. I am a full time Linux SysAdmin so I could help you out.
Oops. Just read the OS type. Send me the top part of your httpd.conf without the virtual host entries. Also you might look at using PHP Accellerator or MMCACHE.
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