Is there a link tool like this? If not, could someone create one for me?

So I run a network of 1,000+ sites and I am highly unorganized with my linking. I have links here and there, links everywhere (interlinking).

In the past few weeks I have been re-organizing my network and removing domains from auto renew that no longer produce. The problem is, once most of these expire, they will still have links coming from my other sites. Is there a tool where I can input a list of my URLs to have it crawl for specific URL and compile a list of the results?

Basically I am looking for something that will tell me all of the places where I placed a link for domain.com and want to be able to remove them. I have not found anything that does the job too well. If you guys cannot suggest an existing one I would happily pay someone to code something up for me.

Any input will be appreciated!